LC-MS/MS-based proteome profiling in Daphnia pulex and Daphnia longicephala: the Daphnia pulex genome database as a key for high throughput proteomics in Daphnia
نویسندگان
چکیده
منابع مشابه
Controlling proteome degradation in Daphnia pulex.
An attempted proteomic study of Daphnia pulex response to sodium chloride exposure revealed an unexpected result: very strong proteome degradation previously observed in D. pulex is halted when animals have been exposed to elevated salinity prior to protein extraction. Further characterization of conditions controlling proteome degradation shows that the proteolytic factor(s) is/are present in ...
متن کاملThe ecoresponsive genome of Daphnia pulex.
We describe the draft genome of the microcrustacean Daphnia pulex, which is only 200 megabases and contains at least 30,907 genes. The high gene count is a consequence of an elevated rate of gene duplication resulting in tandem gene clusters. More than a third of Daphnia's genes have no detectable homologs in any other available proteome, and the most amplified gene families are specific to the...
متن کاملPopulation Genomics of Daphnia pulex.
Using data from 83 isolates from a single population, the population genomics of the microcrustacean Daphnia pulex are described and compared to current knowledge for the only other well-studied invertebrate, Drosophila melanogaster These two species are quite similar with respect to effective population sizes and mutation rates, although some features of recombination appear to be different, w...
متن کاملEye movements in Daphnia pulex (De Geer).
1. The various types of eye movement exhibited by the cyclopean eye of Daphnia pulex were studied using high speed motion photography. 2. This rudimentary eye, which consists of only 22 ommatidia, can move through approximately 150 degrees in the sagittal plane and 60 degrees in the horizontal plane. 3. Four classes of eye movement were found: (1) a high speed tremor at 16 Hz with an amplitude ...
متن کاملA New Reference Genome Assembly for the Microcrustacean Daphnia pulex
Comparing genomes of closely related genotypes from populations with distinct demographic histories can help reveal the impact of effective population size on genome evolution. For this purpose, we present a high quality genome assembly of Daphnia pulex (PA42), and compare this with the first sequenced genome of this species (TCO), which was derived from an isolate from a population with >90% r...
متن کاملذخیره در منابع من
با ذخیره ی این منبع در منابع من، دسترسی به آن را برای استفاده های بعدی آسان تر کنید
ژورنال
عنوان ژورنال: BMC Genomics
سال: 2009
ISSN: 1471-2164
DOI: 10.1186/1471-2164-10-171